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GWAS-related eQTLs across different cancer types

We identified 337,131 eQTLs that overlap with GWAS linkage disequilibrium (LD) regions (r² ≥ 0.5).



e.g., "STAD"
e.g., "r²>= 0.8"
e.g., "rs2273"
Cancer type
eQTL type
tagSNP
LD
SNP ID
SNP position (hg19)
Gene symbol
Gene position (hg19)
Beta
t-stat
p-value
GWAS-Traits
THYM cis rs9309473 1 rs7558944 chr2:73810909 ALMS1P chr2:73872046-73912692:+ 0.59 4.56 1.53E-5 Metabolite levels
THYM cis rs3820928 1 rs7561378 chr2:227772248 RHBDD1 chr2:227700773-227861591:+ -0.31 -4.56 1.54E-5 Pulmonary function
THYM cis rs9309473 1 rs7564890 chr2:73641853 ALMS1P chr2:73872046-73912692:+ 0.59 4.4 2.8E-5 Metabolite levels
THYM cis rs60843830 1 rs7566279 chr2:281178 SH3YL1 chr2:218138-264810:- -0.33 -4.86 4.59E-6 Spherical equivalent (joint main effects and education interaction)
THYM cis rs1559040 1 rs7571660 chr2:54347384 RTN4 chr2:55199329-55277734:- -0.51 -4.25 4.97E-5 Sudden cardiac arrest
THYM cis rs9309473 1 rs7572722 chr2:73724675 ALMS1P chr2:73872046-73912692:+ 0.59 4.52 1.75E-5 Metabolite levels
THYM cis rs9309473 1 rs7576245 chr2:73829678 ALMS1P chr2:73872046-73912692:+ 0.58 4.7 8.77E-6 Metabolite levels
THYM cis rs4372836 1 rs7579277 chr2:28996295 TRMT61B chr2:29072690-29093175:- -0.49 -4.13 7.78E-5 Body mass index
THYM cis rs757978 1 rs757978 chr2:242371101 SEPT2 chr2:242254723-242293439:+ 0.45 6.26 1.12E-8 Chronic lymphocytic leukemia
THYM cis rs3820928 1 rs7579961 chr2:227776976 RHBDD1 chr2:227700773-227861591:+ -0.31 -4.54 1.63E-5 Pulmonary function
THYM cis rs9309473 1 rs7580825 chr2:73635148 ALMS1P chr2:73872046-73912692:+ 0.61 4.79 6.13E-6 Metabolite levels
THYM cis rs2239557 1 rs75824542 chr14:74523047 LIN52 chr14:74551656-74667117:+ 0.38 7.07 2.63E-10 Common traits (Other)
THYM cis rs9309473 1 rs7582606 chr2:73813945 ALMS1P chr2:73872046-73912692:+ 0.59 4.56 1.53E-5 Metabolite levels
THYM cis rs9309473 1 rs7583255 chr2:73797996 ALMS1P chr2:73872046-73912692:+ 0.59 4.53 1.69E-5 Metabolite levels
THYM cis rs9309473 1 rs7584575 chr2:73666402 ALMS1P chr2:73872046-73912692:+ 0.57 4.75 7.32E-6 Metabolite levels